PMD report

Problems found

#FileLineProblem
1 bsh/util/JConsole.java 88 Avoid unused private fields such as 'doc'
2 bsh/util/JConsole.java 592 Avoid unused private methods such as 'setStyle(Color)'
3 bsh/util/JConsole.java 647 Avoid unused private methods such as 'setStyle(AttributeSet)'
4 bsh/util/JConsole.java 651 Avoid unused private methods such as 'setStyle(AttributeSet,boolean)'
5 org/_3pq/lipidia/tools/result/CompotypesAtTimeVisitor.java 108 Avoid unused private methods such as 'findCompotypesForTime(Repetition,double)'
6 org/_3pq/lipidia/ui/CompotypeColorizer.java 110 Avoid unused private methods such as 'createFreeColors()'

Processing errors

FileProblem
org/_3pq/lipidia/tools/result/CompositeResultVisitor.java Error while parsing org/_3pq/lipidia/tools/result/CompositeResultVisitor.java
org/_3pq/lipidia/tools/result/ResultUtils.java Error while parsing org/_3pq/lipidia/tools/result/ResultUtils.java
org/_3pq/lipidia/util/Roulette.java Error while parsing org/_3pq/lipidia/util/Roulette.java
org/_3pq/lipidia/util/MathUtils.java Error while parsing org/_3pq/lipidia/util/MathUtils.java
org/_3pq/lipidia/logic/GridBuilder.java Error while parsing org/_3pq/lipidia/logic/GridBuilder.java
org/_3pq/lipidia/logic/DefaultAssemblyTracker.java Error while parsing org/_3pq/lipidia/logic/DefaultAssemblyTracker.java
org/_3pq/lipidia/charts/AbstractXYLineChart.java Error while parsing org/_3pq/lipidia/charts/AbstractXYLineChart.java
org/_3pq/lipidia/LipidiaSimulation.java Error while parsing org/_3pq/lipidia/LipidiaSimulation.java
org/_3pq/lipidia/Params.java Error while parsing org/_3pq/lipidia/Params.java
org/_3pq/lipidia/behavior/BehaviorUtils.java Error while parsing org/_3pq/lipidia/behavior/BehaviorUtils.java
org/_3pq/lipidia/plugins/PluginUtils.java Error while parsing org/_3pq/lipidia/plugins/PluginUtils.java
org/_3pq/lipidia/plugins/CompotypeLogger.java Error while parsing org/_3pq/lipidia/plugins/CompotypeLogger.java
org/_3pq/lipidia/plugins/PluginManager.java Error while parsing org/_3pq/lipidia/plugins/PluginManager.java
org/_3pq/lipidia/plugins/Reaper.java Error while parsing org/_3pq/lipidia/plugins/Reaper.java
org/_3pq/lipidia/GraphicalSimulator.java Error while parsing org/_3pq/lipidia/GraphicalSimulator.java
org/_3pq/lipidia/AbstractSimulationModel.java Error while parsing org/_3pq/lipidia/AbstractSimulationModel.java
org/_3pq/lipidia/ui/shell/BeanShell.java Error while parsing org/_3pq/lipidia/ui/shell/BeanShell.java
org/_3pq/lipidia/ui/shell/ShellUtils.java Error while parsing org/_3pq/lipidia/ui/shell/ShellUtils.java
org/_3pq/lipidia/ui/ChartToDataConnector.java Error while parsing org/_3pq/lipidia/ui/ChartToDataConnector.java