PMD report

Problems found

#FileLineProblem
1 net/sf/octet/builder/AbstractRepresentationBuilder.java 317 Avoid unused private methods such as 'proxyToTemplate(AtomProxy)'
2 net/sf/octet/builder/AbstractRepresentationBuilder.java 334 Avoid unused private methods such as 'proxyToTemplate(BondingSystemProxy)'
3 net/sf/octet/builder/AbstractRepresentationBuilder.java 351 Avoid unused private methods such as 'proxyToTemplate(OrbitalProxy)'
4 net/sf/octet/builder/AbstractRepresentationBuilder.java 368 Avoid unused private methods such as 'proxyToTemplate(ConfigurationProxy)'
5 net/sf/octet/builder/AbstractRepresentationBuilder.java 385 Avoid unused private methods such as 'proxyToTemplate(HalfPlaneProxy)'
6 net/sf/octet/builder/AbstractRepresentationBuilder.java 447 Avoid unused private fields such as 'moleculeID'
7 net/sf/octet/builder/AbstractRepresentationBuilder.java 574 Avoid unused private fields such as 'moleculeID'
8 net/sf/octet/builder/AbstractRepresentationBuilder.java 700 Avoid unused private fields such as 'moleculeID'
9 net/sf/octet/builder/AbstractRepresentationBuilder.java 838 Avoid unused private fields such as 'moleculeID'
10 net/sf/octet/builder/AbstractRepresentationBuilder.java 927 Avoid unused private fields such as 'moleculeID'
11 net/sf/octet/builder/AbstractRepresentationBuilder.java 1086 Avoid unused private fields such as 'moleculeID'
12 net/sf/octet/builder/BasicMoleculeBuilder.java 329 Avoid unused private fields such as 'molecule'
13 net/sf/octet/model/BasicAtomicSystem.java 722 Avoid unused private fields such as 'abundance'
14 net/sf/octet/model/BasicMoleculeConvertor.java 77 Avoid unused formal parameters such as 'molecule'
15 net/sf/octet/query/AllCyclesMoleculeQuery.java 272 Avoid unused private fields such as 'count'
16 net/sf/octet/query/BasicConformationComparator.java 145 Avoid unused private methods such as 'findMatch(Conformation,PaddleWheel,AtomMap)'
17 net/sf/octet/xml/XMLWriter.java 1141 Avoid unused private methods such as 'write(char)'